Bioinformatics

Next Generation Sequencing Data analysis

Transcriptomics (RNASeq) - BAM/FASTQ → Differential gene expression → e.g( Cancer, other diseases)
Subtyping / clustering
Single cell RNASeq data analysis
TCR (T-cell receptor data analysis)
Genomics - BAM/fastq → variants → annotation

Microsoft - Supporting Image

Population Genetic Analysis - Supporting Image

Population genetic analysis

Comparative Genomics

Comparative Genomics - Supporting Image

Microarray Data - Supporting Image

Microarray data analysis

De Novo based genome and transcriptome assembly

De Novo based genome and transcriptome assembly - Supporting Image

Visualization of data using R packages - Supporting Image

Visualization of data using R packages

Project Management

Project Management - Supporting Image

Agile Process Management - Supporting Image

Handle project using Agile process for successful and timely delivery

Work with multiple stakeholders to implement project
Manage the project by Epic → Story → Tasks
GUI and backend testing
Project to development to testing to deployment
Tools like JIRA, confluence etc

Experience of working on

High Performance Computing environment
End to end Workflow/Pipeline development including pdf report generation
Technical Expertise
Linux
Perl
R
Python
Shell
mongodb, MySQL, Postgresql
AWS, Bioconductor, Docker, GitHub

CISCO - Supporting Image

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